recipe rnaredprint

Tree-decomposition based dynamic programming algorithm for multiple target RNA design

Homepage:

https://github.com/yannponty/RNARedPrint

License:

GPL

Recipe:

/rnaredprint/meta.yaml

Links:

doi: 10.1186/s12859-019-2784-7

package rnaredprint

versions:

0.3-1,  0.3-0,  0.3pre-4,  0.3pre-3,  0.3pre-2,  0.3pre-1,  0.3pre-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends matplotlib-base:

depends numpy:

depends openjdk:

depends python:

>=3.12,<3.13.0a0

depends scipy:

depends viennarna:

>=2.4

depends viennarna:

>=2.7.0,<2.8.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rnaredprint

and update with::

   mamba update rnaredprint

To create a new environment, run:

mamba create --name myenvname rnaredprint

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rnaredprint:<tag>

(see `rnaredprint/tags`_ for valid values for ``<tag>``)

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