recipe rnashapes/2.1.6

RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule’s folding space.

Homepage

http://bibiserv.techfak.uni-bielefeld.de/rnashapes

License

Unknown, see web page

Recipe

/rnashapes/2.1.6/meta.yaml

package rnashapes

Versions

3.3.0-0, 2.1.6-2, 2.1.6-1, 2.1.6-0

Depends

• bellmans-gapc

• boost 1.61*

• gsl 1.16*

• libgcc

• perl 5.22.0*

Required By

• graphprot

• sshmm

• eden

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rnashapes

and update with:

conda update rnashapes

or use the docker container:

docker pull quay.io/biocontainers/rnashapes:<tag>

(see rnashapes/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnashapes/README.html)