recipe rnavirhost

RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes

Homepage:

https://github.com/GreyGuoweiChen/VirHost.git

License:

MIT / MIT

Recipe:

/rnavirhost/meta.yaml

package rnavirhost

versions:

1.0.5-0

depends biopython:

>=1.83

depends blast:

>=2.12.0

depends numpy:

>=1.23.5

depends pandas:

>=2.0.3

depends prodigal:

>=2.6.3

depends python:

depends scikit-learn:

>=1.1.3

depends xgboost:

>=1.7.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rnavirhost

and update with::

   mamba update rnavirhost

To create a new environment, run:

mamba create --name myenvname rnavirhost

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rnavirhost:<tag>

(see `rnavirhost/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnavirhost/README.html)