recipe roary

Rapid large-scale prokaryote pan genome analysis

Homepage:

https://github.com/sanger-pathogens/Roary

License:

GPL-3.0

Recipe:

/roary/meta.yaml

Links:

biotools: roary, usegalaxy-eu: roary

package roary

Versions:

3.13.0-1,  3.13.0-0,  3.12.0-2,  3.12.0-1,  3.12.0-0,  3.10.2-0,  3.9.1-0,  3.8.2-0,  3.8.0-1, 

3.13.0-1,  3.13.0-0,  3.12.0-2,  3.12.0-1,  3.12.0-0,  3.10.2-0,  3.9.1-0,  3.8.2-0,  3.8.0-1,  3.7.0-0

Depends:

• bedtools

• blast

• cd-hit

• fasttree

• mafft

• mcl

• parallel >=20180522

• perl >=5.26.2,<5.26.3.0a0

• perl-array-utils

• perl-bioperl >=1.7.2

• perl-digest-md5-file

• perl-exception-class

• perl-file-find-rule

• perl-file-grep

• perl-file-path

• perl-file-slurper

• perl-file-temp

• perl-file-which

• perl-getopt-long

• perl-graph

• perl-graph-readwrite

• perl-log-log4perl

• perl-moose

• perl-perlio-utf8_strict

• perl-text-csv

• prank

Required By:

• nullarbor

• smeg

• bohra

• gifrop

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install roary

and update with:

conda update roary

or use the docker container:

docker pull quay.io/biocontainers/roary:<tag>

(see roary/tags for valid values for <tag>)

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