recipe roary

Rapid large-scale prokaryote pan genome analysis

Homepage

https://github.com/sanger-pathogens/Roary

License

GPL-3.0

Recipe

/roary/meta.yaml

Links

biotools: roary

package roary

(downloads) docker_roary

Versions

3.12.0-1, 3.12.0-0, 3.10.2-0, 3.9.1-0, 3.8.2-0, 3.8.0-1, 3.7.0-0

Depends bedtools

Depends blast

Depends cd-hit

Depends fasttree

Depends libgcc-ng

>=4.9

Depends mafft

Depends mcl

Depends parallel

>=20180522

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-array-utils

Depends perl-bioperl

>=1.7.2

Depends perl-digest-md5-file

Depends perl-exception-class

Depends perl-file-find-rule

Depends perl-file-grep

Depends perl-file-path

Depends perl-file-slurper

Depends perl-file-temp

Depends perl-file-which

Depends perl-getopt-long

Depends perl-graph

Depends perl-graph-readwrite

Depends perl-log-log4perl

Depends perl-moose

Depends perl-perlio-utf8_strict

Depends perl-text-csv

Depends prank

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install roary

and update with:

conda update roary

or use the docker container:

docker pull quay.io/biocontainers/roary:<tag>

(see roary/tags for valid values for <tag>)