recipe rsat-core

Detection of regulatory signals in non-coding sequences.

Homepage:

http://rsat.eu/

License:

AGPL-3

Recipe:

/rsat-core/meta.yaml

Links:

biotools: rsat, doi: 10.1093/nar/gky317

package rsat-core

Versions:

2020.02.29-1,  2020.02.29-0,  2020.02.28-0,  2020.01.04-0

Depends:

• bedtools

• bioconductor-ctc

• bioconductor-qvalue

• blast

• d3

• ghostscript

• gnuplot

• httplib2

• libcxx >=9.0.1

• libgfortran >=4.0.0,<5.0.0.a0

• matplotlib

• numpy

• perl >=5.26.2,<5.26.3.0a0

• perl-algorithm-cluster

• perl-bio-das

• perl-bioperl

• perl-cgi

• perl-class-std-fast

• perl-data-dumper

• perl-db-file

• perl-dbd-mysql

• perl-dbi

• perl-digest-md5-file

• perl-email-simple

• perl-ensembl-api

• perl-ensembl-genomes

• perl-file-spec

• perl-gd

• perl-http-tiny

• perl-io-all

• perl-json

• perl-lockfile-simple

• perl-log-log4perl

• perl-lwp-simple

• perl-math-cdf

• perl-mce-shared

• perl-number-format

• perl-object-insideout

• perl-ole-storage_lite

• perl-parallel-forkmanager

• perl-posix

• perl-readonly

• perl-rest-client

• perl-soap-lite

• perl-spreadsheet-writeexcel

• perl-statistics-distributions

• perl-util-properties

• perl-xml-dom

• perl-xml-libxml

• perl-xml-parser

• perl-yaml

• pygraphviz

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• pyyaml

• r-amap

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dendextend

• r-devtools

• r-dplyr

• r-dynamictreecut

• r-egg

• r-flux

• r-ggplot2

• r-gplots

• r-gridextra

• r-jpeg

• r-png

• r-rcolorbrewer

• r-reshape2

• r-rjsonio

• r-zoo

• scipy

• seqlogo

• snakemake

• vmatch

• weblogo

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rsat-core

and update with:

conda update rsat-core

or use the docker container:

docker pull quay.io/biocontainers/rsat-core:<tag>

(see rsat-core/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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