recipe rscape

R-scape (RNA Structural Covariation Above Phylogenetic Expectation) looks for evidence of a conserved RNA secondary structure by measuring pairwise covariations observed in an input multiple sequence alignment.

Homepage:

http://eddylab.org/R-scape/

License:

GPLv3

Recipe:

/rscape/meta.yaml

package rscape

(downloads) docker_rscape

versions:
1.4.0-5,  1.4.0-4,  1.4.0-3,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.2.2-2,  1.2.2-1,  1.2.2-0, 

1.4.0-5,  1.4.0-4,  1.4.0-3,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.2.2-2,  1.2.2-1,  1.2.2-0,  1.0.4-2,  1.0.4-1,  0.8.3-8,  0.8.3-7,  0.8.3-6,  0.8.3-5,  0.8.3-4,  0.8.3-3,  0.8.3-2,  0.8.3-1,  0.8.3-0,  0.6.1-4,  0.6.1-3,  0.6.1-2,  0.6.1-0,  0.3.1-0,  0.2.1-0

depends gnuplot:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends perl:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rscape

and update with::

   mamba update rscape

To create a new environment, run:

mamba create --name myenvname rscape

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rscape:<tag>

(see `rscape/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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