recipe rseqc

QC package for RNA-seq data.

Homepage:

https://rseqc.sourceforge.net

Documentation:

https://rseqc.sourceforge.net/#usage-information

License:

GPL2 / GPL-2.0-or-later

Recipe:

/rseqc/meta.yaml

Links:

biotools: rseqc, doi: 10.1093/bioinformatics/bts356

package rseqc

versions:

5.0.4-0,  5.0.3-3,  5.0.3-2,  5.0.3-1,  5.0.3-0,  5.0.1-1,  5.0.1-0,  5.0.0-0,  4.0.0-2, 

5.0.4-0,  5.0.3-3,  5.0.3-2,  5.0.3-1,  5.0.3-0,  5.0.1-1,  5.0.1-0,  5.0.0-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  3.0.0-3,  3.0.0-1,  3.0.0-0,  2.6.4-2,  2.6.4-1,  2.6.4-0,  2.6.2-0

depends bx-python:

depends logomaker:

depends numpy:

depends pybigwig:

depends pysam:

depends python:

>=3.5

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rseqc

and update with::

   mamba update rseqc

To create a new environment, run:

mamba create --name myenvname rseqc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rseqc:<tag>

(see `rseqc/tags`_ for valid values for ``<tag>``)

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