recipe rseqc

RNA-seq QC Package

Homepage:

http://rseqc.sourceforge.net/

License:

GPL2 / GNU General Public License v2 (GPLv2)

Recipe:

/rseqc/meta.yaml

Links:

biotools: rseqc, doi: 10.1093/bioinformatics/bts356

package rseqc

Versions:

5.0.1-0,  5.0.0-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  3.0.0-3, 

5.0.1-0,  5.0.0-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  3.0.0-3,  3.0.0-1,  3.0.0-0,  2.6.4-2,  2.6.4-1,  2.6.4-0,  2.6.2-0

Depends:

• bx-python

• libgcc-ng >=12

• numpy

• pip

• pybigwig

• pysam

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• r-base

Required By:

• tin-score-calculation

• how_are_we_stranded_here

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rseqc

and update with:

conda update rseqc

or use the docker container:

docker pull quay.io/biocontainers/rseqc:<tag>

(see rseqc/tags for valid values for <tag>)

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