recipe rseqc

RNA-seq QC Package

Homepage

http://rseqc.sourceforge.net/

License

GPL2 / GNU General Public License v2 (GPLv2)

Recipe

/rseqc/meta.yaml

Links

biotools: rseqc, doi: 10.1093/bioinformatics/bts356

package rseqc

Versions

4.0.0-1,  4.0.0-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  3.0.0-3,  3.0.0-1,  3.0.0-0,  2.6.4-2, 

4.0.0-1,  4.0.0-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  3.0.0-3,  3.0.0-1,  3.0.0-0,  2.6.4-2,  2.6.4-1,  2.6.4-0,  2.6.2-0

Depends

• bx-python

• libgcc-ng >=9.3.0

• numpy

• pip

• pybigwig

• pysam

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• r-base

Required By

• tin-score-calculation

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rseqc

and update with:

conda update rseqc

or use the docker container:

docker pull quay.io/biocontainers/rseqc:<tag>

(see rseqc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rseqc/README.html)