recipe runjob

Manage jobs or pipeline of bioinfomation.

Homepage:

https://github.com/yodeng/runjob

License:

MIT / MIT

Recipe:

/runjob/meta.yaml

Runjob is a program for managing a group of related bioinformatic jobs or pipelines running on a compute cluster.

package runjob

(downloads) docker_runjob

versions:

2.10.6-0,  2.10.5-0,  2.10.4-0,  2.10.3-0,  2.10.2-0

depends configparser:

>=5.0.2

depends prettytable:

>=3.2.0

depends psutil:

>=5.7.0

depends python:

>=3.5

depends ratelimiter:

>=1.2.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install runjob

and update with::

   mamba update runjob

To create a new environment, run:

mamba create --name myenvname runjob

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/runjob:<tag>

(see `runjob/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/runjob/README.html)