recipe safesim

SafeSeqS variant simulator

Homepage:

https://github.com/genetronhealth/safesim

License:

APACHE / Apache-2.0

Recipe:

/safesim/meta.yaml

Links:

doi: TODO-waiting-for-publication

package safesim

versions:

0.1.6.8d44580-4,  0.1.6.8d44580-3,  0.1.6.8d44580-2,  0.1.6.8d44580-1,  0.1.6.8d44580-0,  0.1.5.f9a66db-0

depends bzip2:

>=1.0.8,<2.0a0

depends fastq-tools:

depends htslib:

>=1.21,<1.22.0a0

depends libcurl:

>=8.11.1,<9.0a0

depends libdeflate:

>=1.22,<1.23.0a0

depends libgcc:

>=13

depends liblzma:

>=5.6.3,<6.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends openssl:

>=3.4.0,<4.0a0

depends xz:

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install safesim

and update with::

   mamba update safesim

To create a new environment, run:

mamba create --name myenvname safesim

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/safesim:<tag>

(see `safesim/tags`_ for valid values for ``<tag>``)

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