recipe salsa2

Salsa is a tool to scaffold long read assemblies with Hi-C.

Homepage:

https://github.com/marbl/SALSA

License:

MIT

Recipe:

/salsa2/meta.yaml

package salsa2

versions:

2.3-1,  2.3-0,  2.2-0

depends boost-cpp:

>=1.74.0,<1.74.1.0a0

depends libgcc-ng:

>=10.3.0

depends libstdcxx-ng:

>=10.3.0

depends networkx:

1.11.*

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install salsa2

and update with::

   mamba update salsa2

To create a new environment, run:

mamba create --name myenvname salsa2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/salsa2:<tag>

(see `salsa2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/salsa2/README.html)