recipe samplot

Plot structural variant signals from BAMs and CRAMs.

Homepage:

https://github.com/ryanlayer/samplot

License:

MIT

Recipe:

/samplot/meta.yaml

package samplot

(downloads) docker_samplot

versions:
1.3.0-1,  1.3.0-0,  1.2.0-0,  1.1.6-0,  1.1.5-0,  1.1.3-0,  1.1.0-0,  1.0.21-0,  1.0.20-0, 

1.3.0-1,  1.3.0-0,  1.2.0-0,  1.1.6-0,  1.1.5-0,  1.1.3-0,  1.1.0-0,  1.0.21-0,  1.0.20-0,  1.0.19-0,  1.0.18-0,  1.0.17-0,  1.0.16-0,  1.0.15-1,  1.0.15-0,  1.0.14-0,  1.0.13-0,  1.0.12-0,  1.0.10-0,  1.0.9-0,  1.0.1-0

depends jinja2:

depends matplotlib-base:

depends numpy:

depends pip:

depends pysam:

>=0.15.2

depends python:

depends wget:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install samplot

and update with::

   mamba update samplot

To create a new environment, run:

mamba create --name myenvname samplot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/samplot:<tag>

(see `samplot/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/samplot/README.html)