recipe samsift

Advanced filtering and tagging of SAM/BAM alignments using Python expressions.

Homepage

https://github.com/karel-brinda/samsift

License

MIT

Recipe

/samsift/meta.yaml

package samsift

(downloads) docker_samsift

Versions

0.2.5-2, 0.2.5-1, 0.2.5-0, 0.2.3-1, 0.2.3-0, 0.2.2-1, 0.2.2-0, 0.2.1-1, 0.2.1-0, 0.2.0-1, 0.2.0-0, 0.1.0-1, 0.1.0-0

Depends pysam

Depends python

>=3.6,<3.7.0a0

Depends python-dateutil

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install samsift

and update with:

conda update samsift

or use the docker container:

docker pull quay.io/biocontainers/samsift:<tag>

(see samsift/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/samsift/README.html)