recipe samsift

Advanced filtering and tagging of SAM/BAM alignments using Python expressions.

Homepage

https://github.com/karel-brinda/samsift

License

MIT

Recipe

/samsift/meta.yaml

package samsift

Versions

0.2.5-3,  0.2.5-2,  0.2.5-1,  0.2.5-0,  0.2.3-1,  0.2.3-0,  0.2.2-1,  0.2.2-0,  0.2.1-1, 

0.2.5-3,  0.2.5-2,  0.2.5-1,  0.2.5-0,  0.2.3-1,  0.2.3-0,  0.2.2-1,  0.2.2-0,  0.2.1-1,  0.2.1-0,  0.2.0-1,  0.2.0-0,  0.1.0-1,  0.1.0-0

Depends

• pysam

• python >=3

• python-dateutil

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install samsift

and update with:

conda update samsift

or use the docker container:

docker pull quay.io/biocontainers/samsift:<tag>

(see samsift/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/samsift/README.html)