recipe samwell

Useful utilities for biological data formats and analyses

Homepage:

https://pypi.org/project/samwell/

License:

MIT

Recipe:

/samwell/meta.yaml

package samwell

versions:

0.0.4-2,  0.0.4-1,  0.0.4-0,  0.0.3-1,  0.0.3-0,  0.0.2-0

depends attrs:

>=19.3.0

depends cython:

depends defopt:

>=6.0

depends intervaltree:

depends libgcc-ng:

>=12

depends mypy_extensions:

>=0.4.3

depends pybedlite:

>=0.0.1

depends pysam:

>=0.15.3

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends typing_extensions:

>=3.7.4

depends typing_inspect:

>=0.3.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install samwell

and update with::

   mamba update samwell

To create a new environment, run:

mamba create --name myenvname samwell

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/samwell:<tag>

(see `samwell/tags`_ for valid values for ``<tag>``)

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