recipe sanitizeme

GUI and CLI tool for removing host DNA from NGS data.

Homepage:

https://github.com/jiangweiyao/SanitizeMe

License:

APACHE / Apache License 2.0

Recipe:

/sanitizeme/meta.yaml

package sanitizeme

(downloads) docker_sanitizeme

versions:

1.1-2,  1.1-1,  1.1-0,  1.0-1,  1.0-0

depends colored:

depends gawk:

depends gooey:

depends grep:

depends minimap2:

depends python:

>=3

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sanitizeme

and update with::

   mamba update sanitizeme

To create a new environment, run:

mamba create --name myenvname sanitizeme

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sanitizeme:<tag>

(see `sanitizeme/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sanitizeme/README.html)