recipe sarscov2formatter

Formatter for Galaxy SARS-CoV2 Selection Analysis Workflow

Homepage:

https://github.com/nickeener/sarscov2formatter

Documentation:

https://github.com/nickeener/sarscov2formatter/README.md

License:

OTHER / AFL-3.0

Recipe:

/sarscov2formatter/meta.yaml

package sarscov2formatter

(downloads) docker_sarscov2formatter

versions:

1.0-0,  0.5.4-1,  0.5.4-0,  0.5.3-0,  0.5.2-0

depends biopython:

depends pandas:

depends python:

>=3.6

depends requests:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sarscov2formatter

and update with::

   mamba update sarscov2formatter

To create a new environment, run:

mamba create --name myenvname sarscov2formatter

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sarscov2formatter:<tag>

(see `sarscov2formatter/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sarscov2formatter/README.html)