recipe sashimi-py

This is an pure Python version of sashimi plot

Homepage:

https://github.com/ygidtu/sashimi.py

Documentation:

https://sashimi.readthedocs.io/en/latest/

License:

BSD / BSD-3-Clause

Recipe:

/sashimi-py/meta.yaml

package sashimi-py

versions:

0.1.5-0,  0.0.4-0

depends adjusttext:

depends cairocffi:

depends click:

depends click-option-group:

depends filetype:

depends hicmatrix:

depends loguru:

depends matplotlib-base:

depends numpy:

depends pandas:

depends pybigwig:

depends pysam:

depends python:

depends requests:

depends seaborn-base:

depends wheel:

depends xmltodict:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sashimi-py

and update with::

   mamba update sashimi-py

To create a new environment, run:

mamba create --name myenvname sashimi-py

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sashimi-py:<tag>

(see `sashimi-py/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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