recipe sbol-utilities

Collection of scripts and functions for manipulating SBOL 3 data that can be run from the command line or as functions in Python.

Homepage:

https://github.com/SynBioDex/SBOL-utilities

License:

MIT

Recipe:

/sbol-utilities/meta.yaml

package sbol-utilities

versions:

1.0a17-0,  1.0a16-0

depends biopython:

depends nodejs:

depends openjdk:

depends openpyxl:

depends pysbol2:

v1.4.1.*

depends pysbol3:

>=1.1

depends python:

>=3.7

depends python-graphviz:

depends rdflib:

>=6.2

depends sbol_factory:

>=1.1

depends tyto:

>=1.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sbol-utilities

and update with::

   mamba update sbol-utilities

To create a new environment, run:

mamba create --name myenvname sbol-utilities

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sbol-utilities:<tag>

(see `sbol-utilities/tags`_ for valid values for ``<tag>``)

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Link to this page

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