recipe sbpipe

SBpipe is a collection of pipelines for systems modelling of biological networks. It allows mathematical modellers to automatically repeat the tasks of model simulation and parameter estimation, and extract robustness information from these repeat sequences in a solid and consistent manner, facilitating model development and analysis. SBpipe can run models implemented in COPASI, Python or coded in any other programming language using Python as a wrapper module. Pipelines can run on multicore computers, Sun Grid Engine (SGE), Load Sharing Facility (LSF) clusters, or via Snakemake.

Homepage

http://sbpipe.readthedocs.io

License

MIT

Recipe

/sbpipe/meta.yaml

Links

doi: 10.1186/s12918-017-0423-3

package sbpipe

(downloads) docker_sbpipe

Versions

4.21.0-0, 4.20.0-0, 4.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sbpipe

and update with:

conda update sbpipe

or use the docker container:

docker pull quay.io/biocontainers/sbpipe:<tag>

(see sbpipe/tags for valid values for <tag>)