recipe sc3-scripts

A set of wrappers for individual components of the SC3 package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

Homepage:

https://github.com/ebi-gene-expression-group/bioconductor-sc3-scripts

License:

GPL / GPL-3

Recipe:

/sc3-scripts/meta.yaml

package sc3-scripts

Versions:

0.0.6-0,  0.0.5-0,  0.0.4-0

Depends:

• bioconductor-biobase

• bioconductor-sc3 >=1.10.0,<1.11

• bioconductor-singlecellexperiment-scripts

• r-base >=3.5.1,<3.5.2.0a0

• r-optparse

• r-workflowscriptscommon

• scater-scripts

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sc3-scripts

and update with:

conda update sc3-scripts

or use the docker container:

docker pull quay.io/biocontainers/sc3-scripts:<tag>

(see sc3-scripts/tags for valid values for <tag>)

Download stats

Link to this page

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