recipe sc3-scripts

A set of wrappers for individual components of the SC3 package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

Homepage

https://github.com/ebi-gene-expression-group/bioconductor-sc3-scripts

License

GPL / GPL-3

Recipe

/sc3-scripts/meta.yaml

package sc3-scripts

Versions

0.0.6-0,  0.0.5-0,  0.0.4-0

Depends

• bioconductor-biobase

• bioconductor-sc3 >=1.10.0,<1.11

• bioconductor-singlecellexperiment-scripts

• r-base >=3.5.1,<3.5.2.0a0

• r-optparse

• r-workflowscriptscommon

• scater-scripts

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sc3-scripts

and update with:

conda update sc3-scripts

or use the docker container:

docker pull quay.io/biocontainers/sc3-scripts:<tag>

(see sc3-scripts/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sc3-scripts/README.html)