recipe scaffold_builder

Scaffold_builder: Combining de novo and reference-guided assembly with Scaffold_builder.

Homepage:

http://edwards.sdsu.edu/scaffold_builder

Developer docs:

https://github.com/metageni/Scaffold_builder

License:

GPL / GPL-3.0

Recipe:

/scaffold_builder/meta.yaml

package scaffold_builder

versions:

2.3-0,  2.2-1,  2.2-0

depends mummer:

depends python:

<3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install scaffold_builder

and update with::

   mamba update scaffold_builder

To create a new environment, run:

mamba create --name myenvname scaffold_builder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/scaffold_builder:<tag>

(see `scaffold_builder/tags`_ for valid values for ``<tag>``)

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