recipe scaffold_builder

Scaffold_builder: Combining de novo and reference-guided assembly with Scaffold_builder.


Developer docs:


GPL / GPL-3.0



package scaffold_builder

(downloads) docker_scaffold_builder



depends mummer:

depends python:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install scaffold_builder

and update with::

   mamba update scaffold_builder

To create a new environment, run:

mamba create --name myenvname scaffold_builder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `scaffold_builder/tags`_ for valid values for ``<tag>``)

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