recipe scanpy-scripts

A set of wrappers for individual components of the scanpy package. Functions in python packages are hard to call when building workflows outside of python, so this package adds a set of simple wrappers with robust argument parsing.

Homepage

https://github.com/ebi-gene-expression-group/scanpy-scripts

License

GPL / GPL-3

Recipe

/scanpy-scripts/meta.yaml

package scanpy-scripts

Versions

0.0.5-2, 0.0.5-1, 0.0.5-0, 0.0.4-2, 0.0.4-1, 0.0.3-1, 0.0.2-0

Depends

• bzip2 >=1.0.6,<2.0a0

• libffi >=3.2.1,<3.3.0a0

• loompy

• matplotlib >=3.0.0

• multicore-tsne 0.1_d4ff4aab

• openssl >=1.1.1b,<1.1.2a

• pandas >=0.21,<0.24

• python >=3.6

• readline >=7.0,<8.0a0

• scanpy 1.3.2

• sqlite >=3.26.0,<4.0a0

• tk >=8.6.9,<8.7.0a0

• xz >=5.2.4,<5.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanpy-scripts

and update with:

conda update scanpy-scripts

or use the docker container:

docker pull quay.io/biocontainers/scanpy-scripts:<tag>

(see scanpy-scripts/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scanpy-scripts/README.html)