recipe scanpy-scripts

Scripts for using scanpy from the command line

Homepage

https://github.com/ebi-gene-expression-group/scanpy-scripts

License

Apache / Apache-2.0

Recipe

/scanpy-scripts/meta.yaml

package scanpy-scripts

Versions

1.1.2-0,  1.1.1-1,  1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.1-1,  1.0.1-0,  1.0.0-1,  1.0.0-0, 

1.1.2-0,  1.1.1-1,  1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.1-1,  1.0.1-0,  1.0.0-1,  1.0.0-0,  0.4.1-0,  0.4.0-0,  0.3.3-3,  0.3.3-2,  0.3.3-1,  0.3.3-0,  0.3.2-0,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-1,  0.2.10-0,  0.2.9-0,  0.2.8-0,  0.2.7-0,  0.2.6-0,  0.2.5.post1-0,  0.2.5-0,  0.2.4.post4-3,  0.2.4.post4-2,  0.2.4.post4-1,  0.2.4.post4-0,  0.2.4.post3-0,  0.2.4.post1-0,  0.2.4-0,  0.2.2-0,  0.0.5-5,  0.0.5-4,  0.0.5-3,  0.0.5-2,  0.0.5-1,  0.0.5-0,  0.0.4-2,  0.0.4-1,  0.0.3-1,  0.0.2-0

Depends

• anndata

• bbknn >=1.5.0

• click <8

• h5py <3.0.0

• harmonypy >=0.0.5

• leidenalg

• loompy

• louvain

• matplotlib-base

• mnnpy >=0.1.9.5

• multicore-tsne

• packaging

• pandas

• python

• python >=3.6

• scanpy 1.8.1.*

• scikit-misc

• scipy

• scrublet

• umap-learn

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanpy-scripts

and update with:

conda update scanpy-scripts

or use the docker container:

docker pull quay.io/biocontainers/scanpy-scripts:<tag>

(see scanpy-scripts/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scanpy-scripts/README.html)