scanpy-scripts

downloads

A set of wrappers for individual components of the scanpy package. Functions in python packages are hard to call when building workflows outside of python, so this package adds a set of simple wrappers with robust argument parsing.

Home https://github.com/ebi-gene-expression-group/scanpy-scripts
Versions 0.0.4, 0.0.3, 0.0.2
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/scanpy-scripts
Development https://github.com/ebi-gene-expression-group/scanpy-scripts

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanpy-scripts

and update with:

conda update scanpy-scripts

docker

A Docker container is available at https://quay.io/repository/biocontainers/scanpy-scripts.