recipe scanpy-scripts

Scripts for using scanpy from the command line

Homepage

https://github.com/ebi-gene-expression-group/scanpy-scripts

License

Apache / Apache-2.0

Recipe

/scanpy-scripts/meta.yaml

package scanpy-scripts

Versions

0.3.0-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-1,  0.2.10-0,  0.2.9-0,  0.2.8-0,  0.2.7-0, 

0.3.0-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-1,  0.2.10-0,  0.2.9-0,  0.2.8-0,  0.2.7-0,  0.2.6-0,  0.2.5.post1-0,  0.2.5-0,  0.2.4.post4-3,  0.2.4.post4-2,  0.2.4.post4-1,  0.2.4.post4-0,  0.2.4.post3-0,  0.2.4.post1-0,  0.2.4-0,  0.2.2-0,  0.0.5-4,  0.0.5-3,  0.0.5-2,  0.0.5-1,  0.0.5-0,  0.0.4-2,  0.0.4-1,  0.0.3-1,  0.0.2-0

Depends

• anndata

• bbknn >=1.3.12

• click

• h5py

• harmonypy >=0.0.5

• leidenalg

• loompy >=2.0.0,<3.0.0

• louvain

• matplotlib-base

• mnnpy >=0.1.9.5

• multicore-tsne

• packaging

• pandas

• python 3.6.*

• scanpy >=1.6.0

• scipy

• umap-learn <0.4.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanpy-scripts

and update with:

conda update scanpy-scripts

or use the docker container:

docker pull quay.io/biocontainers/scanpy-scripts:<tag>

(see scanpy-scripts/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scanpy-scripts/README.html)