recipe schicexplorer

Set of programs to process, analyze and visualize single-cell Hi-C data.

Homepage

https://github.com/joachimwolff/scHiCExplorer

License

GPL3

Recipe

/schicexplorer/meta.yaml

package schicexplorer

Versions

7-0,  6-0,  5-0,  4-0,  3-0,  2-0,  1-0

Depends

• cooler >=0.8.10

• hicexplorer >=3.6

• hicmatrix >=15

• holoviews

• hyperopt

• matplotlib-base

• numpy >=1.18

• python >3

• scikit-learn >=0.22

• scipy >=1.4

• sparse-neighbors-search >=0.7

• umap-learn

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install schicexplorer

and update with:

conda update schicexplorer

or use the docker container:

docker pull quay.io/biocontainers/schicexplorer:<tag>

(see schicexplorer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/schicexplorer/README.html)