recipe scmap-cli

CLI scripts for the scmap package

Homepage:

https://github.com/ebi-gene-expression-group/scmap-cli

License:

GPL / Apache 2.0

Recipe:

/scmap-cli/meta.yaml

A set of wrappers for operations associated with the scmap package. Functions in R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

package scmap-cli

Versions:

0.0.11-1,  0.0.11-0,  0.0.10-0,  0.0.9-0,  0.0.8-0,  0.0.5-0,  0.0.4-0,  0.0.3-0,  0.0.2-1, 

0.0.11-1,  0.0.11-0,  0.0.10-0,  0.0.9-0,  0.0.8-0,  0.0.5-0,  0.0.4-0,  0.0.3-0,  0.0.2-1,  0.0.2-0,  0.0.1-0

Depends:

• bioconductor-biobase

• bioconductor-loomexperiment

• bioconductor-scmap >=1.6.0,<1.7

• bioconductor-singlecellexperiment

• r-optparse

• r-workflowscriptscommon

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install scmap-cli

and update with:

conda update scmap-cli

or use the docker container:

docker pull quay.io/biocontainers/scmap-cli:<tag>

(see scmap-cli/tags for valid values for <tag>)

Download stats

Link to this page

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