recipe scmap-cli

CLI scripts for the scmap package

Homepage

https://github.com/ebi-gene-expression-group/scmap-cli

License

GPL / Apache 2.0

Recipe

/scmap-cli/meta.yaml

A set of wrappers for operations associated with the scmap package. Functions in R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

package scmap-cli

(downloads) docker_scmap-cli

Versions

0.0.10-00.0.9-00.0.8-00.0.5-00.0.4-00.0.3-00.0.2-10.0.2-00.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scmap-cli

and update with:

conda update scmap-cli

or use the docker container:

docker pull quay.io/biocontainers/scmap-cli:<tag>

(see scmap-cli/tags for valid values for <tag>)