recipe scrappie

Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

Homepage:

https://github.com/nanoporetech/scrappie

License:

OTHER / Mozilla Public License 2.0 (MPL 2.0)

Recipe:

/scrappie/meta.yaml

package scrappie

versions:

1.4.2-6,  1.4.2-5,  1.4.2-4,  1.4.2-3,  1.4.2-2,  1.4.2-1,  1.4.2-0,  1.4.1-0,  1.3.2-2, 

1.4.2-6,  1.4.2-5,  1.4.2-4,  1.4.2-3,  1.4.2-2,  1.4.2-1,  1.4.2-0,  1.4.1-0,  1.3.2-2,  1.3.2-0

depends cffi:

>=1.0.0

depends cunit:

depends hdf5:

>=1.14.3,<1.14.4.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends mkl:

depends numpy:

>=1.22.4,<2.0a0

depends openblas:

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install scrappie

and update with::

   mamba update scrappie

To create a new environment, run:

mamba create --name myenvname scrappie

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/scrappie:<tag>

(see `scrappie/tags`_ for valid values for ``<tag>``)

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