recipe scrnasim-toolz

Tools used by scRNAsim workflow.

Homepage:

https://github.com/zavolanlab/scRNAsim-toolz

License:

MIT / MIT

Recipe:

/scrnasim-toolz/meta.yaml

package scrnasim-toolz

versions:

0.1.1-0,  0.1.0-0

depends biopython:

>=1.78

depends gtfparse:

depends importlib-metadata:

depends numpy:

>=1.23.3

depends packaging:

depends pandas:

>=1.4.4

depends polars:

0.16.17

depends pyarrow:

depends python:

<=3.10

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install scrnasim-toolz

and update with::

   mamba update scrnasim-toolz

To create a new environment, run:

mamba create --name myenvname scrnasim-toolz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/scrnasim-toolz:<tag>

(see `scrnasim-toolz/tags`_ for valid values for ``<tag>``)

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