- recipe sctagger
Fast and accurate matching of cellular barcodes across short- and long-reads of single-cell RNA-seq experiments
- package sctagger¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install sctagger and update with:: mamba update sctagger
To create a new environment, run:
mamba create --name myenvname sctagger
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/sctagger:<tag> (see `sctagger/tags`_ for valid values for ``<tag>``)