recipe sctagger

Fast and accurate matching of cellular barcodes across short- and long-reads of single-cell RNA-seq experiments

Homepage:

https://github.com/vpc-ccg/sctagger

License:

MIT

Recipe:

/sctagger/meta.yaml

package sctagger

Versions:

1.1-0,  1.0.1-0

Depends:

• matplotlib-base

• numpy >=1.16

• pandas

• pyahocorasick

• pysam >=0.15

• python >=3.8

• python-edlib

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sctagger

and update with:

conda update sctagger

or use the docker container:

docker pull quay.io/biocontainers/sctagger:<tag>

(see sctagger/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sctagger/README.html)