recipe sctriangulate

A Python package to mix-and-match conflicting clustering results in single cell analysis, and generate reconciled clustering solutions.

Homepage:

https://github.com/frankligy/scTriangulate

License:

MIT / MIT

Recipe:

/sctriangulate/meta.yaml

package sctriangulate

versions:

0.13.0-0

depends anytree:

depends gseapy:

0.10.4

depends mygene:

3.2.2

depends python:

>=3.7

depends scrublet:

0.2.3

depends squidpy:

depends yattag:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sctriangulate

and update with::

   mamba update sctriangulate

To create a new environment, run:

mamba create --name myenvname sctriangulate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sctriangulate:<tag>

(see `sctriangulate/tags`_ for valid values for ``<tag>``)

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Link to this page

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