secapr

downloads

Process sequence-capture FASTQ files into alignments for phylogenetic analyses. Integrates allele phasing, producing haplotype alignments.

Home https://github.com/AntonelliLab/seqcap_processor
Versions 1.0.1, 1.0.2
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/secapr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install secapr

and update with:

conda update secapr

docker

A Docker container is available at https://quay.io/repository/biocontainers/secapr.