recipe secedo

SNV-based clustering for single-cell sequencing data

Homepage:

https://github.com/ratschlab/secedo

License:

MIT

Recipe:

/secedo/meta.yaml

Links:

biotools: secedo

package secedo

versions:

1.0.7-2,  1.0.7-1,  1.0.7-0,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.4-1,  1.0.4-0,  1.0.3-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends openblas:

depends openmp:

depends zlib:

>=1.2.13,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install secedo

and update with::

   mamba update secedo

To create a new environment, run:

mamba create --name myenvname secedo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/secedo:<tag>

(see `secedo/tags`_ for valid values for ``<tag>``)

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