recipe secimtools

Metabolomics tools from the SECIM project

Homepage:

https://github.com/secimTools/SECIMTools

License:

MIT / MIT License

Recipe:

/secimtools/meta.yaml

suite of standalone and Galaxy tools for processing of metabolomics data.

package secimtools

Versions:

22.3.23-0,  21.6.3-0,  21.3.4.2-0,  1.0.0-4,  1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-impute

• lxml

• matplotlib-base

• matplotlib-venn

• numpy >=1.16

• palettable

• pandas

• perl-vcftools-vcf

• pymc

• python >=3.7

• r-glmnet

• rpy2

• scikit-learn

• scipy

• seaborn

• statsmodels

Required By:

• gait-gm

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install secimtools

and update with:

conda update secimtools

or use the docker container:

docker pull quay.io/biocontainers/secimtools:<tag>

(see secimtools/tags for valid values for <tag>)

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Link to this page

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