recipe segmentation-fold

RNA-Folding with predefined segments including K-turns and loop-E-motifs



GNU General Public License v3 or later (GPLv3+)



package segmentation-fold

(downloads) docker_segmentation-fold



depends boost:


depends click:


depends htseq:


depends libgcc-ng:


depends libstdcxx-ng:


depends pysam:


depends python:


depends python_abi:

2.7.* *_cp27mu



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install segmentation-fold

and update with::

   mamba update segmentation-fold

To create a new environment, run:

mamba create --name myenvname segmentation-fold

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `segmentation-fold/tags`_ for valid values for ``<tag>``)

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