recipe segway

a tool for easy pattern discovery and identification in functional genomics data.

Homepage:

http://segway.hoffmanlab.org/

License:

GPL2

Recipe:

/segway/meta.yaml

Links:

doi: 10.1093/bioinformatics/btx603, biotools: segway

package segway

versions:

3.0.4-1,  3.0.4-0,  3.0.3-0,  3.0.2-1,  3.0.2-0,  3.0-1,  3.0-0,  2.0.5-1,  2.0.5-0, 

3.0.4-1,  3.0.4-0,  3.0.3-0,  3.0.2-1,  3.0.2-0,  3.0-1,  3.0-0,  2.0.5-1,  2.0.5-0,  2.0.4-1,  2.0.4-0,  2.0.2-3,  2.0.2-2,  2.0.2-1,  2.0.2-0,  2.0.1-0,  2.0-0,  1.4.4-0,  1.4-0

depends autolog:

depends colorbrewer:

depends drmaa:

>=0.4a3

depends genomedata:

depends gmtk:

>=1.4.4

depends optbuild:

depends optplus:

depends path.py:

depends python:

depends six:

depends textinput:

depends ucsc-bedtobigbed:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install segway

and update with::

   mamba update segway

To create a new environment, run:

mamba create --name myenvname segway

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/segway:<tag>

(see `segway/tags`_ for valid values for ``<tag>``)

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