recipe selene-sdk

Framework for developing sequence-level deep learning networks.

Homepage

https://github.com/FunctionLab/selene

License

BSD 3-clause clear

Recipe

/selene-sdk/meta.yaml

package selene-sdk

(downloads) docker_selene-sdk

Versions

0.3.0-2, 0.3.0-1, 0.3.0-0, 0.2.0-1, 0.2.0-0, 0.1.3-0, 0.1.2-0, 0.0.1-0

Depends cython

>=0.29.3

Depends h5py

Depends libgcc-ng

>=7.3.0

Depends matplotlib

Depends numpy

1.15.1

Depends pandas

Depends plotly

Depends pyfaidx

Depends pytabix

Depends python

>=3.6,<3.7.0a0

Depends pytorch

>=0.4.1,<1

Depends pyyaml

3.13

Depends scikit-learn

Depends scipy

Depends seaborn

Depends statsmodels

Depends torchvision

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install selene-sdk

and update with:

conda update selene-sdk

or use the docker container:

docker pull quay.io/biocontainers/selene-sdk:<tag>

(see selene-sdk/tags for valid values for <tag>)