recipe semibin

Metagenomic binning with semi-supervised siamese neural network

Homepage:

https://github.com/BigDataBiology/SemiBin

License:

MIT / MIT

Recipe:

/semibin/meta.yaml

package semibin

Versions:

1.0.1-0,  1.0.0-0,  0.7.0-0,  0.6.0-0,  0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3-0,  0.2-1, 

1.0.1-0,  1.0.0-0,  0.7.0-0,  0.6.0-0,  0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3-0,  0.2-1,  0.2-0

Depends:

• atomicwrites

• bedtools

• fraggenescan 1.30.*

• hmmer

• mmseqs2 13.45111.*

• numexpr

• numpy >=1.20

• pandas

• prodigal

• python

• python-igraph

• pytorch 1.8.*

• pyyaml

• requests

• scikit-learn

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install semibin

and update with:

conda update semibin

or use the docker container:

docker pull quay.io/biocontainers/semibin:<tag>

(see semibin/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/semibin/README.html)