recipe semibin

Metagenomic binning with siamese neural networks

Homepage:

https://github.com/BigDataBiology/SemiBin

License:

MIT / MIT

Recipe:

/semibin/meta.yaml

package semibin

Versions:

1.5.1-0,  1.5.0-1,  1.5.0-0,  1.4.0-0,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.1-1,  1.1.1-0, 

1.5.1-0,  1.5.0-1,  1.5.0-0,  1.4.0-0,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.7.0-0,  0.6.0-0,  0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3-0,  0.2-1,  0.2-0

Depends:

• bedtools

• coloredlogs

• fraggenescan

• hmmer

• mmseqs2 13.45111.*

• numexpr

• numpy

• pandas

• prodigal

• python >=3.7

• python-igraph

• pytorch

• pyyaml

• requests

• samtools

• scikit-learn

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install semibin

and update with:

conda update semibin

or use the docker container:

docker pull quay.io/biocontainers/semibin:<tag>

(see semibin/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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