recipe seq-gen

Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process.

Homepage:

http://tree.bio.ed.ac.uk/software/Seq-Gen/

Developer docs:

https://github.com/rambaut/Seq-Gen

License:

BSD / BSD-3-Clause

Recipe:

/seq-gen/meta.yaml

package seq-gen

(downloads) docker_seq-gen

versions:

1.3.4-8,  1.3.4-7,  1.3.4-6,  1.3.4-5,  1.3.4-4,  1.3.4-3,  1.3.4-2,  1.3.4-0,  1.3.3-0

depends libgcc:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seq-gen

and update with::

   mamba update seq-gen

To create a new environment, run:

mamba create --name myenvname seq-gen

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seq-gen:<tag>

(see `seq-gen/tags`_ for valid values for ``<tag>``)

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Link to this page

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