recipe seq2science

Automated preprocessing of Next-Generation-Sequencing data.

Homepage:

https://vanheeringen-lab.github.io/seq2science

Developer docs:

https://github.com/vanheeringen-lab/seq2science

License:

MIT / MIT

Recipe:

/seq2science/meta.yaml

package seq2science

Versions:

1.0.0-0,  0.9.9-0,  0.9.8-0,  0.9.7-0,  0.9.6-0,  0.9.5-0,  0.9.4-0,  0.9.3-0,  0.9.2-1, 

1.0.0-0,  0.9.9-0,  0.9.8-0,  0.9.7-0,  0.9.6-0,  0.9.5-0,  0.9.4-0,  0.9.3-0,  0.9.2-1,  0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.0-0,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.1-0,  0.6.0-0,  0.5.6-0,  0.5.5-0,  0.5.4-0,  0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-1,  0.4.0-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.3-0,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.0-0,  0.0.3-0,  0.0.2-0,  0.0.1-0,  0.0.0-0

Depends:

• argcomplete 3.0.5.*

• biopython 1.81.*

• conda 23.1.0.*

• conda-ecosystem-user-package-isolation 1.0.*

• filelock 3.10.7.*

• genomepy 0.15.0.*

• mamba 1.2.0.*

• matplotlib-base 3.7.1.*

• pandas 1.5.3.*

• pandas_schema 0.3.5.*

• pysradb 2.0.1.*

• python 3.10.*

• pyyaml 6.0.*

• snakemake-minimal 7.25.0.*

• tabulate 0.9.0.*

• trackhub 0.1.2019.12.24.*

• xdg 6.0.0.*

Required By:

• anansnake

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install seq2science

and update with:

conda update seq2science

or use the docker container:

docker pull quay.io/biocontainers/seq2science:<tag>

(see seq2science/tags for valid values for <tag>)

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