recipe seqan_tcoffee

SeqAn::T-Coffee - Multiple Sequence Alignment

Homepage:

http://www.seqan.de/apps/seqan-t-coffee/

Developer docs:

https://github.com/seqan/seqan/tree/master/apps/seqan_tcoffee

License:

GPL / GPL (>=3)

Recipe:

/seqan_tcoffee/meta.yaml

Links:

doi: 10.1093/bioinformatics/btn281

package seqan_tcoffee

(downloads) docker_seqan_tcoffee

versions:

1.13.8-4,  1.13.8-3,  1.13.8-2,  1.13.8-1,  1.13.8-0,  1.13.3-2,  1.13.3-1,  1.13.3-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seqan_tcoffee

and update with::

   mamba update seqan_tcoffee

To create a new environment, run:

mamba create --name myenvname seqan_tcoffee

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seqan_tcoffee:<tag>

(see `seqan_tcoffee/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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