recipe seqchromloader

Sequence and chromatin dataloader for deep learning

Homepage:

https://github.com/yztxwd/seqchromloader

Documentation:

https://github.com/seqcode/seqchromloader

Developer docs:

https://github.com/seqcode/seqchromloader

License:

MIT

Recipe:

/seqchromloader/meta.yaml

package seqchromloader

Versions:

0.2.4-0,  0.2.1-0

Depends:

• numpy >=1.17

• pandas

• pybedtools >=0.9.0

• pybigwig >=0.3.0

• pyfasta >=0.5.0

• pysam >=0.19.0

• python >=3.7,<3.10

• pytorch >=1.10.0

• pytorch-lightning >=1.7.0,<1.8.0

• webdataset >=0.2.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install seqchromloader

and update with:

conda update seqchromloader

or use the docker container:

docker pull quay.io/biocontainers/seqchromloader:<tag>

(see seqchromloader/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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