recipe seqcluster

small RNA analysis from NGS data

Homepage

https://github.com/lpantano/seqclsuter

License

MIT

Recipe

/seqcluster/meta.yaml

Links

biotools: seqcluster

package seqcluster

(downloads) docker_seqcluster

Versions

1.2.5-0, 1.2.4-0, 1.2.4a15-1, 1.2.4a15-0, 1.2.4a14-2, 1.2.4a14-1, 1.2.4a14-0, 1.2.4a12-1, 1.2.4a12-0, 1.2.4a6-0, 1.2.4a5-0, 1.2.4a-6, 1.2.4a-5, 1.2.4a-4, 1.2.4a-2, 1.2.4a-1, 1.2.4a-0, 1.2.3-0, 1.2.2-0, 1.2.1-0, 1.2.0-0, 1.1.14-0, 1.1.13-3, 1.1.13-2, 1.1.13-1, 1.1.13-0

Depends biopython

Depends mirtop

>=0.4.17a

Depends pandas

Depends progressbar2

Depends pybedtools

Depends pysam

>=0.8.1

Depends python

Depends pyyaml

Depends scipy

Depends six

Depends viennarna

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install seqcluster

and update with:

conda update seqcluster

or use the docker container:

docker pull quay.io/biocontainers/seqcluster:<tag>

(see seqcluster/tags for valid values for <tag>)