recipe seqcluster

small RNA analysis from NGS data

Homepage:

https://github.com/lpantano/seqclsuter

License:

MIT

Recipe:

/seqcluster/meta.yaml

Links:

biotools: seqcluster

package seqcluster

Versions:

1.2.9-0,  1.2.8-0,  1.2.7-1,  1.2.7-0,  1.2.5-0,  1.2.4-0,  1.2.4a15-1,  1.2.4a15-0,  1.2.4a14-2, 

1.2.9-0,  1.2.8-0,  1.2.7-1,  1.2.7-0,  1.2.5-0,  1.2.4-0,  1.2.4a15-1,  1.2.4a15-0,  1.2.4a14-2,  1.2.4a14-1,  1.2.4a14-0,  1.2.4a12-1,  1.2.4a12-0,  1.2.4a6-0,  1.2.4a5-0,  1.2.4a-6,  1.2.4a-5,  1.2.4a-4,  1.2.4a-2,  1.2.4a-1,  1.2.4a-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.14-0,  1.1.13-3,  1.1.13-2,  1.1.13-1,  1.1.13-0

Depends:

• biopython

• mirtop

• pandas

• progressbar2

• pybedtools

• pysam

• python

• pyyaml

• scipy

• six

• viennarna

Required By:

• bcbio-nextgen

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install seqcluster

and update with:

conda update seqcluster

or use the docker container:

docker pull quay.io/biocontainers/seqcluster:<tag>

(see seqcluster/tags for valid values for <tag>)

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