recipe seqfu

DNA sequence utilities (N50, de/interleave FASTQ, grep etc.)

Homepage

http://github.com/quadram-institute-bioscience/seqfu/

License

mit

Recipe

/seqfu/meta.yaml

Links

biotools: seqfu

A collection of utilities to work with FASTX (FASTA or FASTQ) files using the FASTX::Reader module that accepts gzipped input. 'n50' will calculate N50, minimum, maximum and total size of the sequences in one or more files, supporting CSV, TSV, JSON and screen friendly output. 'interleafq' allows to interleave or deinterleave paired-end sequences.

package seqfu

(downloads) docker_seqfu

Versions

0.5.1-00.5.0-00.2.0-10.2.0-00.1.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install seqfu

and update with:

conda update seqfu

or use the docker container:

docker pull quay.io/biocontainers/seqfu:<tag>

(see seqfu/tags for valid values for <tag>)