recipe seqmap

SeqMap is a tool for mapping large amount of oligonucleotide to the genome.

Homepage:

http://www-personal.umich.edu/~jianghui/seqmap/

License:

Custom OSS

Recipe:

/seqmap/meta.yaml

Links:

doi: https://doi.org/10.1093/bioinformatics/btn429

package seqmap

(downloads) docker_seqmap

versions:

1.0.13-1,  1.0.13-0

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seqmap

and update with::

   mamba update seqmap

To create a new environment, run:

mamba create --name myenvname seqmap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seqmap:<tag>

(see `seqmap/tags`_ for valid values for ``<tag>``)

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Link to this page

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