recipe seqnado

Pipelines for genomics analysis

Homepage:

https://alsmith151.github.io/SeqNado/

License:

GPL-3.0-or-later

Recipe:

/seqnado/meta.yaml

package seqnado

versions:

0.5.4-0,  0.5.3-0,  0.5.2-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.3-0,  0.4.1-0

depends click:

depends cookiecutter:

depends drmaa:

depends pandas:

depends pulp:

<=2.7.0

depends pydantic:

depends python:

>=3.10

depends pyyaml:

depends seaborn:

depends setuptools-scm:

depends singularity:

depends snakemake:

>=8,<9

depends snakemake-wrapper-utils:

depends tracknado:

depends wget:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seqnado

and update with::

   mamba update seqnado

To create a new environment, run:

mamba create --name myenvname seqnado

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seqnado:<tag>

(see `seqnado/tags`_ for valid values for ``<tag>``)

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