recipe seqprep

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

Homepage:

https://github.com/jstjohn/SeqPrep

License:

MIT / MIT

Recipe:

/seqprep/meta.yaml

Links:

biotools: seqprep, doi: 10.1134/S1021443716020175

package seqprep

versions:

1.3.2-9,  1.3.2-8,  1.3.2-7,  1.3.2-6,  1.3.2-5,  1.3.2-4,  1.3.2-3,  1.3.2-2,  1.2-1, 

1.3.2-9,  1.3.2-8,  1.3.2-7,  1.3.2-6,  1.3.2-5,  1.3.2-4,  1.3.2-3,  1.3.2-2,  1.2-1,  1.2-0,  1.1-2,  1.1-1,  1.1-0

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seqprep

and update with::

   mamba update seqprep

To create a new environment, run:

mamba create --name myenvname seqprep

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seqprep:<tag>

(see `seqprep/tags`_ for valid values for ``<tag>``)

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