recipe seqscreen

SeqScreen was created to sensitively assign taxonomic classifications, functional annotations, and biological processes of interest to single, short DNA sequences (50bp-1,000bp).

Homepage

https://gitlab.com/treangenlab/seqscreen/-/wikis/home

License

GPL3

Recipe

/seqscreen/meta.yaml

package seqscreen

Versions

1.3.1-0,  1.3.0-1,  1.3.0-0

Depends

• blast >=2.9

• centrifuge-core

• diamond 0.9.26.*

• jinja2

• nextflow

• python >=3

• scikit-learn

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install seqscreen

and update with:

conda update seqscreen

or use the docker container:

docker pull quay.io/biocontainers/seqscreen:<tag>

(see seqscreen/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/seqscreen/README.html)