recipe seqspec

File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.

Homepage:

https://github.com/sbooeshaghi/seqspec

License:

MIT

Recipe:

/seqspec/meta.yaml

package seqspec

versions:

0.3.1-0,  0.3.0-0

depends biopython:

depends jsonschema:

depends packaging:

depends python:

>=3.6

depends python-newick:

depends pyyaml:

>=6.0

depends requests:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seqspec

and update with::

   mamba update seqspec

To create a new environment, run:

mamba create --name myenvname seqspec

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seqspec:<tag>

(see `seqspec/tags`_ for valid values for ``<tag>``)

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