recipe seqtk

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Homepage

https://github.com/lh3/seqtk

License

MIT

Recipe

/seqtk/meta.yaml

Links

biotools: seqtk

package seqtk

Versions

1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2-1,  1.2-0,  r93-0,  r82-1,  r82-0, 

1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2-1,  1.2-0,  r93-0,  r82-1,  r82-0,  r75-0

Depends

• libgcc-ng >=9.3.0

• zlib >=1.2.11,<1.3.0a0

Required By

• snippy

• shovill

• fargene

• fermi2

• ectyper

• mosca

• bioconvert

• ericscript

• grid

• megapath

• snikt

• shovill-se

• panpasco

• relocate2

• dragonflye

• nullarbor

• telr

• bwakit

• ddocent

• trnanalysis

• fermikit

• megapath-nano

• bohra

• mapdamage2

• virmet

• haplotype-lso

• minvar

• skmer

• haphpipe

• metaclassifier

• ngs_te_mapper2

• phyluce

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install seqtk

and update with:

conda update seqtk

or use the docker container:

docker pull quay.io/biocontainers/seqtk:<tag>

(see seqtk/tags for valid values for <tag>)

Download stats

Link to this page

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