recipe seqtk

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Homepage

https://github.com/lh3/seqtk

License

MIT

Recipe

/seqtk/meta.yaml

Links

biotools: seqtk

package seqtk

Versions

1.3-2,  1.3-1,  1.3-0,  1.2-1,  1.2-0,  r93-0,  r82-1,  r82-0,  r75-0

Depends

• libgcc-ng >=7.3.0

• zlib >=1.2.11,<1.3.0a0

Required By

• fermi2

• mapdamage2

• fargene

• nullarbor

• ddocent

• bioconvert

• haphpipe

• ectyper

• haplotype-lso

• virmet

• snippy

• trnanalysis

• fermikit

• bwakit

• relocate2

• ericscript

• panpasco

• shovill

• grid

• bohra

• skmer

• secapr

• phyluce

• minvar

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install seqtk

and update with:

conda update seqtk

or use the docker container:

docker pull quay.io/biocontainers/seqtk:<tag>

(see seqtk/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/seqtk/README.html)