recipe seqtk

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Homepage:

https://github.com/lh3/seqtk

License:

MIT

Recipe:

/seqtk/meta.yaml

Links:

biotools: seqtk

package seqtk

Versions:

1.4-0,  1.3-6,  1.3-5,  1.3-4,  1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2-1, 

1.4-0,  1.3-6,  1.3-5,  1.3-4,  1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2-1,  1.2-0,  r93-0,  r82-1,  r82-0,  r75-0

Depends:

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib >=1.2.13,<1.3.0a0

Required By:

• minvar

• bioconvert

• mapdamage2

• markermag

• fermi2

• virmet

• skmer

• shovill

• dragonflye

• ectyper

• metaclassifier

• panpasco

• fermikit

• ngs_te_mapper2

• stag

• haplotype-lso

• metapi

• ddocent

• ptgaul

• ericscript

• grid

• megapath

• snippy

• snikt

• bwakit

• nullarbor

• fargene

• viralflye

• trnanalysis

• relocate2

• shovill-se

• telr

• haphpipe

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install seqtk

and update with:

conda update seqtk

or use the docker container:

docker pull quay.io/biocontainers/seqtk:<tag>

(see seqtk/tags for valid values for <tag>)

Download stats

Link to this page

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