recipe sequana

A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis

Homepage:

http://sequana.readthedocs.io/

Documentation:

https://sequana.readthedocs.io

License:

BSD / BSD 3-clause

Recipe:

/sequana/meta.yaml

package sequana

Versions:

0.15.1-0,  0.14.3-0,  0.14.2-0,  0.14.1-0,  0.14.0-0,  0.13.2-0,  0.8.2-2,  0.8.2-1,  0.8.2-0, 

0.15.1-0,  0.14.3-0,  0.14.2-0,  0.14.1-0,  0.14.0-0,  0.13.2-0,  0.8.2-2,  0.8.2-1,  0.8.2-0,  0.7.1-2,  0.7.1-1,  0.7.0-0,  0.6.3.post1-0,  0.6.1-0,  0.6.0-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.1-0,  0.4.0-0,  0.3.0-0,  0.2.1-0,  0.2.0-0

Depends:

• adjusttext

• bioservices >=1.10.0

• brokenaxes

• bx-python

• click >=8.1.0

• colorlog >=3.1.0

• colormap

• cookiecutter <2

• cython

• docutils

• easydev >=0.11.1

• gseapy

• itolapi

• lxml

• matplotlib-base <3.6

• matplotlib-venn

• mock

• multiqc <=1.11

• packaging

• pandas >=0.22

• plotly

• psutil

• pykwalify

• pysam >=0.16

• python

• ruamel.yaml >=0.16.0

• scikit-learn

• scipy

• seaborn

• snakemake-minimal >=7.16

• statsmodels

• tqdm

• upsetplot

• vcfpy

• xlrd

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sequana

and update with:

conda update sequana

or use the docker container:

docker pull quay.io/biocontainers/sequana:<tag>

(see sequana/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sequana/README.html)