recipe sequana

A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis

Homepage

http://sequana.readthedocs.io/

License

BSD / BSD 3-clause

Recipe

/sequana/meta.yaml

package sequana

(downloads) docker_sequana

Versions

0.7.1-1, 0.7.0-0, 0.6.3.post1-0, 0.6.1-0, 0.6.0-0, 0.5.2-0, 0.5.1-0, 0.5.0-0, 0.4.1-0, 0.4.0-0, 0.3.0-0, 0.2.1-0, 0.2.0-0

Depends atropos

1.1.16

Depends bcftools

Depends bedtools

Depends biokit

>=0.4.3

Depends bioservices

>=1.5.1

Depends bleach

Depends bowtie

Depends bowtie2

Depends bwa

Depends colorlog

Depends cutadapt

Depends easydev

>=0.9.36

Depends fastq-screen

Depends fastqc

0.11.5

Depends freebayes

Depends graphviz

Depends khmer

Depends kraken

Depends krona

Depends mock

Depends multiqc

1.0

Depends numexpr

Depends pandas

Depends pigz

Depends psutil

Depends pysam

Depends python

>=3.5,<3.6.0a0

Depends pyvcf

Depends pyyaml

Depends qtconsole

Depends ruamel.yaml

Depends sambamba

Depends samtools

Depends shustring

Depends snakemake

4.0.0

Depends snpeff

Depends spades

Depends subread

Depends xlrd

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sequana

and update with:

conda update sequana

or use the docker container:

docker pull quay.io/biocontainers/sequana:<tag>

(see sequana/tags for valid values for <tag>)