recipe seqwish

Alignment to variation graph inducer

Homepage:

https://github.com/ekg/seqwish

License:

MIT

Recipe:

/seqwish/meta.yaml

package seqwish

(downloads) docker_seqwish

versions:
0.7.11-0,  0.7.10-1,  0.7.10-0,  0.7.9-2,  0.7.9-1,  0.7.9-0,  0.7.8-0,  0.7.7-1,  0.7.7-0, 

0.7.11-0,  0.7.10-1,  0.7.10-0,  0.7.9-2,  0.7.9-1,  0.7.9-0,  0.7.8-0,  0.7.7-1,  0.7.7-0,  0.7.6-1,  0.7.6-0,  0.7.5-0,  0.7.4-0,  0.7.3-1,  0.7.3-0,  0.7.2-0,  0.7.1-0,  0.4.1-1,  0.4.1-0,  0.4-0,  0.2.1-0

depends libgcc:

>=12

depends libjemalloc:

>=5.3.0

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends python:

>=3.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seqwish

and update with::

   mamba update seqwish

To create a new environment, run:

mamba create --name myenvname seqwish

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seqwish:<tag>

(see `seqwish/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/seqwish/README.html)