recipe sfold

Software for Statistical Folding of Nucleic Acids

Homepage:

https://github.com/Ding-RNA-Lab/Sfold

License:

OTHER

Recipe:

/sfold/meta.yaml

package sfold

(downloads) docker_sfold

versions:

2.2-3,  2.2-2,  2.2-1,  2.2-0

depends gawk:

depends grep:

depends libgcc:

>=12

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends r-base:

>=4.3,<4.4.0a0

depends r-cluster:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sfold

and update with::

   mamba update sfold

To create a new environment, run:

mamba create --name myenvname sfold

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sfold:<tag>

(see `sfold/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sfold/README.html)