recipe shannon_cpp

shannon_cpp is command line tool for denovo rna assembly

Homepage:

https://github.com/bx3/shannon_cpp.git

License:

GPL v3.0

Recipe:

/shannon_cpp/meta.yaml

package shannon_cpp

versions:

0.5.0-0,  0.4.0-0

depends boost-cpp:

>=1.70.0,<1.70.1.0a0

depends coreutils:

depends glpk:

>=4.65,<4.66.0a0

depends kmer-jellyfish:

2.*

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

depends metis:

>=5.1.0,<5.2.0a0

depends perl:

>=5.26.2,<5.26.3.0a0

depends python:

>=2.7,<2.8.0a0

depends rcorrector:

1.*

depends sparsehash:

depends wget:

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install shannon_cpp

and update with::

   mamba update shannon_cpp

To create a new environment, run:

mamba create --name myenvname shannon_cpp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/shannon_cpp:<tag>

(see `shannon_cpp/tags`_ for valid values for ``<tag>``)

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